rs253859182 SNP Detail

Summary

• ID
  rs253859182
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:119802355 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCAGGCGG GTGAGGGTGT
  GAATGAAGTG CGTCTGAACT CTTGTCTGAT TGAATTCCAC TCGACCATTG GGGTTCTCGC
  AGCCCTCCCT GCAGCAGCCA CAGGGGAAGG ACGTGTGATC CATCTGCAGA GAAAGACAAA
  GCCAAAGTGA GAACTTCGGA GATGCAAGAA GCCAGCAGGC CCGGCTCCCC ACAGACAGGG
  Y
  TTCCCTGTGT AGCCCTGCCC GAGTACTGGG ATTATAGGCA CACCCCCCTT ATCTTACCCA
  GTCCGACCAC GCACCTGGCA CTTAATGCCG GCCAAGCTGC AACTGCAGGT CTCAGGGTCA
  CAGACGCCAT CACAGTGACA ACCACAATCC TCCCGGGACT GGCGCAGCAC CTGCAGCTCC
  CGCTTCTCCT CTCGGTCAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323223777	CHEV_9_119882407	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253859182					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:119802355 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22487	CpG island 22487	830 bp proximal
Csrnp1	cysteine-serine-rich nuclear protein 1	Intron
Rr688588	regulatory region 688588	1759 bp distal
Rr688590	regulatory region 688590	769 bp proximal
Rr688591	regulatory region 688591	1468 bp proximal
Rr688592	regulatory region 688592	1512 bp proximal