rs253864165 SNP Detail

Summary

• ID
  rs253864165
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:43444922 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTAACTCTT TCTGTGGTTA
  ATCATACTAT CAAGATTTAT GACCTCAAAA ATTTTAAAGT CCATTTATTA GGCAGTAAAA
  TATTTCGAGG AATTAGTGGA CTATATTAAT TTTTCTTTTG CAGCAAAGTC CTCTGCCTTT
  AGGACTGAGC ACTTGAGTCA GTGGTAGGTA CCACCACACA CAGTTTATTT TAAACTTTTG
  Y
  ATAAAACCTG TATTCACTAT AAGTCAAAAA CCCTGCAATC AAAGTTGATC AGTGGTTCAT
  TGTCTCAAAA TCCAGGAGAA ATGTGTCCAG AGTTCAAGGA GAGCATTCCT CTGGGTTTGG
  GATGTTTCAG AGCACAGATT GAAAATAAAG GCAGATGTTG GAGTTCAGCT CTCTGACACA
  GTGCTCACAG CAGAGCTCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320267204	CHEV_2_43410430	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253864165					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:43444922 () rs orientation: forward

Symbol	Name	Function Class
Kynu	kynureninase	419 bp upstream
Rr396942	regulatory region 396942	1553 bp upstream
Rr556278	regulatory region 556278	94 bp distal
Rr556279	regulatory region 556279	127 bp proximal
Rr556280	regulatory region 556280	455 bp proximal
Tssr17589	transcription start site region 17589	411 bp upstream
Tssr17590	transcription start site region 17590	435 bp upstream
Tssr17591	transcription start site region 17591	452 bp upstream