rs253869441 SNP Detail

Summary

• ID
  rs253869441
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:162897949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGGGCTTAT CTGAGGGTCT
  CTTTTGTGAA GTGTGGACTC TGTGCCCCTG CATCCTCACG AGCCTTTCTC TGCCACATGG
  TGTGACTCCC TGTACCCCAG TGGCCCACTT CCCTCTTGGC CTCTGACTCA CCTTTCCCTG
  GAGCATAGCC CAGAACGTAC AAGGGCAAGA GAAAGGGTAT GTGTATATAC AAAAGTGTGA
  S
  TTTTCTTTAA ACAGCACACT GGCCTCTGCT TTTCATGCTA CGGTTCCTAG GGAGGTTAGG
  GTGTAAAAAT GTGGAGCTTG GTGTGACATA ATCGTTGTCG GCCTCACTTT TCCCGTCTGT
  TAAATGGAGC CCTTGAGAAT GCGCAAGAAG GTGTGTGACT GATGGATACT CCCATCTGTT
  TAATAGTGTG ACCATGCCGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356397392	MGP_WTSI_2_162881765	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253869441					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356397392	MGP_WTSI_2_162881765	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:162897949 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12626	CpG island 12626	625 bp distal
Gm75254	predicted gene, 75254	1615 bp upstream
Mybl2	myeloblastosis oncogene-like 2	Intron
Rr397459	regulatory region 397459	1369 bp downstream
Rr569271	regulatory region 569271	1626 bp distal
Rr569272	regulatory region 569272	1332 bp distal
Rr569273	regulatory region 569273	within coordinates
Rr569274	regulatory region 569274	675 bp proximal
Tssr21431	transcription start site region 21431	1446 bp downstream
Tssr21432	transcription start site region 21432	1380 bp downstream
Tssr21433	transcription start site region 21433	1352 bp downstream
Tssr21434	transcription start site region 21434	1336 bp downstream
Tssr27277	transcription start site region 27277	1609 bp upstream
Tssr27278	transcription start site region 27278	1575 bp upstream