rs253875152 SNP Detail

Summary

• ID
  rs253875152
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55206439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCCAGCCC TACAGTCTGA
  TGAACATTCT AGAGTATGTG GACACAGATG GACGCTCTGG CCACAGGTGA GAAGGACCAT
  TCCTTTGTTA CCTGGCTCCC CCGTCTCTGT CTGTTCCTGT GTCTACCTTC TGTTCCCTGT
  CTCGACATTA ACCCTAGCCT CTGGTGTTCT GGTGCTCTGC CTTCAGCAGG CTGATTTCAC
  K
  GAGCGCTCAA CCTGGCTTGT CCTTGCTTCC ATGTCTTGCC CCGGGGTCCT TCTTCTACTC
  TCTCCAGCTT CCCTTCTCCC TGTCTTTCAT GATTTACATC TAAAGGTAGC CTGGGTTCTT
  CCCTTTATGG TATCGTTTCC AGCGCTTCCA GATTCTCTGT TCCAGGCTCC TTCTCACCTT
  CTCTCTCCCC CCCAGACTCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391147611	MGP_WTSI_14_55587819	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253875152					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391147611	MGP_WTSI_14_55587819	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55206439 () rs orientation: forward

Symbol	Name	Function Class
Mhrt	myosin heavy chain associated RNA transcript	within coordinates
Myh7	myosin, heavy polypeptide 7, cardiac muscle, beta	1702 bp downstream
Rr407057	regulatory region 407057	1199 bp distal
Rr492379	regulatory region 492379	1851 bp distal
Rr492380	regulatory region 492380	177 bp distal
Rr492381	regulatory region 492381	679 bp proximal
Tssr125718	transcription start site region 125718	299 bp downstream
Tssr125719	transcription start site region 125719	207 bp downstream
Tssr125720	transcription start site region 125720	182 bp downstream
Tssr125721	transcription start site region 125721	170 bp downstream
Tssr125722	transcription start site region 125722	244 bp upstream
Tssr125723	transcription start site region 125723	313 bp upstream
Tssr125724	transcription start site region 125724	325 bp upstream
Tssr125725	transcription start site region 125725	1185 bp upstream
Tssr125726	transcription start site region 125726	1210 bp upstream
Tssr125727	transcription start site region 125727	1243 bp upstream
Tssr128745	transcription start site region 128745	1760 bp upstream
Tssr128746	transcription start site region 128746	1007 bp upstream
Tssr128747	transcription start site region 128747	983 bp upstream
Tssr128748	transcription start site region 128748	939 bp upstream
Tssr128749	transcription start site region 128749	908 bp upstream
Tssr128750	transcription start site region 128750	886 bp upstream
Tssr128751	transcription start site region 128751	880 bp upstream
Tssr128752	transcription start site region 128752	821 bp upstream
Tssr128753	transcription start site region 128753	622 bp upstream
Tssr128754	transcription start site region 128754	552 bp upstream
Tssr128755	transcription start site region 128755	1733 bp downstream
Tssr128756	transcription start site region 128756	1750 bp downstream