rs253876053 SNP Detail

Summary

• ID
  rs253876053
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:108532843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAATGCCAT TTAACCACCA
  AATTCTTTCT TTAAATGTAC TAGTCTTGCT CTCATTCACC TTAAGCCCTC TACATGAACT
  GTTCACTCCA CCAGAAGAGC TCTCCCTACA AAACCCCAAA TAATAGTTGG CTGCCTGAAT
  TCTTCAAGTT TCCACTCCAA CTTGATACCC TCATTGTATC CTACTCTAAC CCTTCATAAT
  Y
  TTTCATGCTC TCATAACCTC CACTGATCAT TTCTTTCTCA TAGCACAGTC AAATAGTAAT
  AATAATTTAC TGTGTATCGA AGCACTTTCT AACCTAATGT AGGATTTAGT CCTTTTCTCT
  CCCCCAAAGA GAATGCAACC CTTTGCTATT TAGTTCACTT ATATACCCTA GCATATAAGA
  GAGAGTCTGG TGCATATTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322388625	CHEV_7_116077150	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253876053					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:108532843 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19551	CpG island 19551	630 bp proximal
D7Mit127	DNA segment, Chr 7, Massachusetts Institute of Technology 127	702 bp distal
Eif3f	eukaryotic translation initiation factor 3, subunit F	779 bp upstream
Rr400539	regulatory region 400539	521 bp upstream
Rr652951	regulatory region 652951	933 bp distal
Rr652952	regulatory region 652952	291 bp proximal
Rr652953	regulatory region 652953	511 bp proximal
Tssr68456	transcription start site region 68456	769 bp upstream
Tssr68457	transcription start site region 68457	881 bp upstream