rs253878020 SNP Detail

Summary

• ID
  rs253878020
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:78717259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGTTGTGG GACTGTAATT
  TGATCAAGTG ACTCGAAATG AAGACTCCCT TCCAAACATA ATTCCTGTCA TCAACATAAC
  AACAGGAAGG ACACGTCCTT CAAGAAGACG TTTCACAGAT CTTGAGCACC CCTAATATTC
  TCCATTCGTG GGAATATGAA GAAGAGCTTG CCATCAGAGT TTGTATCCAA GGTTGTAAGG
  R
  AGACAAGGAA AAGCGGGCCG TGGTTCCAGC CAACTGGGCG GGGTCGGATC AGGAAGCCCG
  CACCCAGTAG GACCCCGAGT CCCGCGGATG GCCGGCAGAG GGCGCTAGGG TACCAGGCGG
  GGGCGGGGCT GCGCTTGCTT CTGCCGCGCA GGCGCAATCG TGTCGCTCGC GGTGTCTCCA
  GTTGGCGTCC GCCGGGAAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383965051	MGP_WTSI_11_78639935	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253878020					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383965051	MGP_WTSI_11_78639935	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:78717259 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3360	CpG island 3360	within coordinates
D11Bhm79	DNA segment, Chr 11, Boehm 79	1855 bp distal
Gm23219	predicted gene, 23219	1960 bp downstream
Lyrm9	LYR motif containing 9	162 bp upstream
Rr452074	regulatory region 452074	1262 bp distal
Rr452075	regulatory region 452075	within coordinates
Rr452076	regulatory region 452076	88 bp proximal
Rr452077	regulatory region 452077	162 bp proximal
Rr452078	regulatory region 452078	171 bp proximal
Rr452079	regulatory region 452079	345 bp proximal
Rr452080	regulatory region 452080	1841 bp proximal
Rr452081	regulatory region 452081	1980 bp proximal
Tssr103332	transcription start site region 103332	142 bp upstream