rs253882409 SNP Detail

Summary

• ID
  rs253882409
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:127127662 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTTTTAGG ATCTCTGCGT
  GTTGGAGGTA GGGATGGAGC GGCTGGGCTT GCCTCTCCCT GAGAGCGTCG CCCGCACACC
  TACCTCTAGC ATCCAGGTGG CCACCATCCT GCGCATGTAC GGTTGGATGT CCTTCTGCAC
  GCACTTGAAA TAGGAACACT GCGGGAGGTA GCGCTCCTCG ATGGTCAACA GGTTCTGCAG
  R
  ACGCGGTCTT CCAGCAGGTT GCGGTCCGGC ACGGCCCTGC GGACCGGGTC CACCTCGCAG
  CACAGCAGCT CCATAGCCAG CCGGCCACCA CTCGGTCCCG ACTGTAAATT TTTTTTATTA
  TTATTATTTT TTGGAGGTGC GGGGGGGTCG GGGAGTGCTT CCCTTACCTC CTTCCTTTGG
  CTGAATGGGA GATTTGGGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369997140	MGP_WTSI_6_127100717	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253882409					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369997140	MGP_WTSI_6_127100717	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:127127662 () rs orientation: forward

Symbol	Name	Function Class
9330179D12Rik	RIKEN cDNA 9330179D12 gene	within coordinates
Ccnd2	cyclin D2	within coordinates
Cpgi18033	CpG island 18033	1138 bp distal
Cpgi18034	CpG island 18034	within coordinates
Cpgi18035	CpG island 18035	936 bp proximal
Rr145781	regulatory region 145781	within coordinates
Rr399942	regulatory region 399942	1738 bp upstream
Tssr59020	transcription start site region 59020	1274 bp downstream
Tssr59021	transcription start site region 59021	456 bp downstream
Tssr59022	transcription start site region 59022	1870 bp upstream
Tssr63368	transcription start site region 63368	1955 bp upstream
Tssr63369	transcription start site region 63369	1925 bp upstream
Tssr63370	transcription start site region 63370	1875 bp upstream
Tssr63371	transcription start site region 63371	1072 bp upstream
Tssr63372	transcription start site region 63372	1049 bp upstream
Tssr63373	transcription start site region 63373	1036 bp upstream
Tssr63374	transcription start site region 63374	23 bp upstream
Tssr63375	transcription start site region 63375	297 bp downstream
Tssr63376	transcription start site region 63376	333 bp downstream
Tssr63377	transcription start site region 63377	345 bp downstream
Tssr63378	transcription start site region 63378	1759 bp downstream