rs253882440 SNP Detail

Summary

• ID
  rs253882440
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:48406222 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAAAAAAA AAACCTTCCG
  CACCTATTAC TCAAATATAA CCAACTATTG AGTCTTAAAG CAAGAAGGTA CAGGACTGGT
  AGATTTAAGC ATGCCAGTCC TGCTTTCCTG CGTTATGTTT ATGGAGTTTT TAAAACACTT
  TAACGTCTGC AATTTCACAC GGAAGTTAAG CGGATAGACT CGGAAACACA TCCTGCACGA
  Y
  GCGGCAAAGG CCAATGAACT CAAATGGGAA GGCACGGTAC ACAGGAAAGA GGAAAGCAAG
  TACTGAGGTT CCACCTCGGA TCCCTGGACT TTTCCAAGGT GGAGACGCAG ATGTCCCCAT
  CATCCGACGT CACTTTCGGC CCGAACGCCG CGGAATTCCG GCTCGGCGCG CTCCGCTCCT
  TGGCCCGGCC TGTGAATGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377499859	MGP_WTSI_9_48303027	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253882440					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377499859	MGP_WTSI_9_48303027	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:48406222 () rs orientation: forward

Symbol	Name	Function Class
1700121I08Rik	RIKEN cDNA 1700121I08 gene	1057 bp downstream
Cpgi21716	CpG island 21716	within coordinates
Gm5617	predicted gene 5617	520 bp upstream
Gm70225	predicted gene, 70225	within coordinates
Rbm7	RNA binding motif protein 7	within coordinates
Rr195326	regulatory region 195326	1779 bp proximal
Rr206379	regulatory region 206379	within coordinates
Rr401354	regulatory region 401354	296 bp upstream
Tssr2862	transcription start site region 2862	950 bp downstream
Tssr84988	transcription start site region 84988	127 bp upstream
Tssr84989	transcription start site region 84989	150 bp upstream
Tssr84990	transcription start site region 84990	289 bp upstream
Tssr84991	transcription start site region 84991	339 bp upstream
Tssr84992	transcription start site region 84992	446 bp upstream
Tssr84993	transcription start site region 84993	484 bp upstream
Tssr84994	transcription start site region 84994	981 bp upstream
Tssr89390	transcription start site region 89390	514 bp upstream
Tssr89391	transcription start site region 89391	495 bp upstream
Tssr89392	transcription start site region 89392	465 bp upstream
Tssr89393	transcription start site region 89393	60 bp downstream
Tssr89394	transcription start site region 89394	344 bp downstream
Tssr89395	transcription start site region 89395	352 bp downstream
Tssr89396	transcription start site region 89396	399 bp downstream