rs253892821 SNP Detail

Summary

• ID
  rs253892821
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:51489722 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAAGTTTT CCAGAAATTG
  TTGAAACTGG ACAGAATCTT AAGTGAAGTA CCCCAGGCTC AGTGAGACAA GGGTCATATG
  CTCTCTGACA TGTAGACATT AGCTTCAAAT GTTAAGTGTG AGGACTTGTG TTAGTGTATG
  TGAGTAGAGA ACAAGAGACA GAAAATGGCC ACCAGAAAAG AGGCTTTGAG GGAGAGAGTG
  S
  TAGAAAGGAC TCTGTCCCAG GAGAGTGCTG TTGTCAACAG GGAACCTCTC TAGAGCATGG
  GGAGTCTGTG GTGCTGACTA GAAACCAATA GAAGTCTTAG ATGACAGAGC CCTGTCATGG
  TGTTCTGATT GCACATAGGC CTCCATATTT GGCTGAGTCA CCCTGCTCCC AGGCAGAAAA
  GCTGTGGCTA TGTCTGGAGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	LG/J	MA/MyJ	NON/ShiLtJ	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
ss391089598	MGP_WTSI_14_51871940	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	LG/J	MA/MyJ	NON/ShiLtJ	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
rs253892821					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391089598	MGP_WTSI_14_51871940	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:51489722 () rs orientation: forward

Symbol	Name	Function Class
D14Mit257	DNA Segment, Chr 14 Massachusetts Institute of Technology 257	1358 bp distal
Gm62421	predicted gene, 62421	within coordinates
Tssr125425	transcription start site region 125425	1599 bp upstream