rs253894287 SNP Detail

Summary

• ID
  rs253894287
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:36631171 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTGTGATGC CCATCTAGAC TCAAAAGGCA
  TTCTCACCCA GCCTCAGAGA GCAAACCACC TGTGGTCCTT CTCATTCTTC TAGTTCAAGG
  CTCAGCAAAG CCAACTAACC CTTAACCCCT Tgggtgggga tggggtgggg tggagtgggg
  A
  TACTTGGTGC AAGGCACATC AGCCTGAGCC TAGTCAATCA GGTGAAGATA GGGGAATGAA
  GCCTCTCCAG GAAACCAGAA GCAGACACTC AGTATAAGTT CAGATGGCTG CACAGTTTTA
  GGATGTGGCA GATATGAGGG CATCCACAGG                                 
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319689118	CHEV_1_36648935	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253894287					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:36631171 () rs orientation: forward

Symbol	Name	Function Class
Fam178b	family with sequence similarity 178, member B	within coordinates
Rr409367	regulatory region 409367	1032 bp distal
Rr409368	regulatory region 409368	280 bp distal
Rr409369	regulatory region 409369	928 bp proximal
Tssr11268	transcription start site region 11268	1225 bp downstream