rs253902925 SNP Detail

Summary

• ID
  rs253902925
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24032522 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTCTTGGG ACTCCAATAA
  TACTCTTGCT CTTGCCACAA TAGCCACATT TGCCACAGGT CAACTTCTGA AGGTGGTGGT
  TAAGTGCCTT AGTGCCATAG AAGTGGCACA TGTACATCGA ATTATGACCA AGGATGATGT
  TTTCTTTTGT CATCTTGCTT CTGCCCAACA AAAAGTTTTC TTTTTTTTTT TTTTTGATTT
  C
  TTTTTTTTTA AATTAGGTAT TTTCCTCGTT TACATTTTCA GTGCTATCCC AAAGGTCCCC
  CATACCCACC CCCCAACAAA AAGTTTTCTA AAAATTACCT TTAACTTTAC TACTTAAAGT
  ATCTATATCC TTTTTATTGT ATGCTTGTCA TGAGTTCTTA CATTTTTCAA TCCTTTGATT
  TGATGCCACC AATCTGAAAG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397842704	MGP_WTSI_17_23950515	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253902925					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397842704	MGP_WTSI_17_23950515	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24032522 () rs orientation: forward

Symbol	Name	Function Class
Gm49911	predicted gene, 49911	48 bp upstream
Srrm2	serine/arginine repetitive matrix 2	within coordinates
Tssr142962	transcription start site region 142962	1170 bp downstream
Tssr142963	transcription start site region 142963	1026 bp downstream
Tssr142964	transcription start site region 142964	82 bp downstream
Tssr142965	transcription start site region 142965	1568 bp upstream
Tssr142966	transcription start site region 142966	1648 bp upstream
Tssr142967	transcription start site region 142967	1724 bp upstream
Tssr142968	transcription start site region 142968	1739 bp upstream
Tssr146670	transcription start site region 146670	1693 bp downstream