rs253903909 SNP Detail

Summary

• ID
  rs253903909
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:35285565 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGCACGGG CGATCGACCG
  GGTAGGATTG TTACTTAGTT GGAGCTCTCT TCTTCATCAC AGTCTAACCC CATTTCAGGG
  GCCCAGCTTG GACCCCACCC CTAATATCAG ATCTTCCTTA GGTCCCGCCT CTCGAATTCT
  GGGCACGCGC ACTCCCTGGT TCTGGGCGGG GCTAGCTTGA GTAGGAAGCG CGGAGTCGCC
  Y
  GGGCCCCACC TCCGACTGAA CTAGACTTAA TGATTGCTCT GTTTACGTGT CAGTCTCGAC
  TAAAACGACC TCTTATTGGA CAGACTGGAG CAGGGTTCCG CCCAACGGCG GAGTAAAGAG
  GTAGGCTGAA GAGTGGAGCC ACCGCACCCG GGTGGTGGGC ACTCAGGTCC CAGCCCAGGG
  TCCGGGAGGT GCTGTCGTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370980562	MGP_WTSI_7_36371159	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	C	T	T	T	C	C	T	C	T	T	C	T	T	C	C	C	T	C	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253903909					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	C	T	T	T	C	C	T	C	T	T	C	T	T	C	C	C	T	C	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370980562	MGP_WTSI_7_36371159	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:35285565 () rs orientation: forward

Symbol	Name	Function Class
Ankrd27	ankyrin repeat domain 27	104 bp upstream
Cpgi18874	CpG island 18874	within coordinates
Rgs9bp	regulator of G-protein signalling 9 binding protein	558 bp upstream
Rr167549	regulatory region 167549	within coordinates
Rr400265	regulatory region 400265	within coordinates
Tssr65908	transcription start site region 65908	92 bp upstream
Tssr65909	transcription start site region 65909	155 bp upstream
Tssr72043	transcription start site region 72043	590 bp upstream
Tssr72044	transcription start site region 72044	573 bp upstream
Tssr72045	transcription start site region 72045	538 bp upstream
Tssr72046	transcription start site region 72046	797 bp downstream