rs253904016 SNP Detail

Summary

• ID
  rs253904016
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:87615101 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTACGTATC TTCAGTTGCC
  CATTGAGCTA GAGCGCCCAG CCCCAGCCCT GGGCCCTCAT AGATGGTCCA ATGGAGCGGT
  TCTCCGAGCA AGGCCGGCTT GCAGCCTAAG GGATTCATAA ATTCTGTGAC GGAGGTGGGG
  GGGGGGGTGG AGTCACTAAA AGGTTTCTGG CATACTCGAC CAGCCCGCAG GAGGAGGCTG
  R
  GCGGCTGATT CCAAGAAACC GCAGGGATTT CCAGACCGGA AGCCTACTTT GTAGTTATGA
  TCTTGTCCCT TTAAATGCCG CACAGTTCAA ACTGGTTTGG GATGTTGAAA CAGGCCTTCT
  AGGCTACCCT GAGGAGCACA GGGTCCCAAG CCCTCCGCTG TCCCTCTGCG TCTTCTTCCA
  ACGTTACCCC TGGCAGCTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378383685	MGP_WTSI_9_87627883	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253904016					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378383685	MGP_WTSI_9_87627883	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:87615101 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22111	CpG island 22111	1584 bp distal
D030062O11Rik	RIKEN cDNA D030062O11 gene	958 bp downstream
Gm69731	predicted gene, 69731	within coordinates
Rr684220	regulatory region 684220	1298 bp distal
Rr684221	regulatory region 684221	1614 bp distal
Rr684222	regulatory region 684222	within coordinates
Rr684223	regulatory region 684223	320 bp proximal
Rr684224	regulatory region 684224	1403 bp proximal
Tbx18	T-box18	1788 bp upstream
Tssr2959	transcription start site region 2959	1804 bp upstream
Tssr2960	transcription start site region 2960	1873 bp downstream
Tssr90806	transcription start site region 90806	1891 bp upstream
Tssr90807	transcription start site region 90807	1876 bp upstream
Tssr90808	transcription start site region 90808	1775 bp upstream
Tssr90809	transcription start site region 90809	1763 bp upstream