rs253907101 SNP Detail

Summary

• ID
  rs253907101
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:120766330 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTCCAATG CCCCCCCCCC
  CAGCCAGCTG GGAGAGGCCT GTCCCCAAGC CTGTTGTGGT GGATGGAGTG ACCAGCCCAG
  CTGTCAACCC CATTGTCTAC TTAACTGAGT TCATACTGAA TGTCCCGTGG AAGGCTCACA
  ATGGCGTGAG GCGTCACCGC TCTGTCTTGC CCAGGAGAAA GGATAGTCAG AGAGCGGTTA
  Y
  GTTGAGCCTG CACACCAAGA AATGTGGGAC TTGGTCCCTC AGGTCCCCTT CACCGTTCGC
  CAGGCCGGAT TAGGAAGCAG TAGCTGTAGG CTGAGCCAGG GCAAGTTTGG CCAGTGTGGC
  TGAGATGTTC ATGATAAACC GCTTCACCTG GGGGCAGAGA TGACATGGCC AGAGTACATC
  CTCTCCCCAC CCCCACAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366479266	MGP_WTSI_5_121078274	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253907101					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366479266	MGP_WTSI_5_121078274	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:120766330 () rs orientation: forward

Symbol	Name	Function Class
Cfap73	cilia and flagella associated protein 73	70 bp downstream
Cpgi16506	CpG island 16506	1024 bp distal
Cpgi16507	CpG island 16507	1460 bp proximal
Ddx54	DEAD box helicase 54	within coordinates
Gm43579	predicted gene 43579	644 bp upstream
Gm72343	predicted gene, 72343	1558 bp upstream
Rr108807	regulatory region 108807	471 bp proximal
Rr126631	regulatory region 126631	1330 bp distal
Rr126632	regulatory region 126632	930 bp distal
Rr126633	regulatory region 126633	within coordinates
Tssr1621	transcription start site region 1621	1496 bp downstream
Tssr48527	transcription start site region 48527	1780 bp upstream
Tssr48528	transcription start site region 48528	1801 bp upstream
Tssr48529	transcription start site region 48529	1817 bp upstream
Tssr48530	transcription start site region 48530	1829 bp upstream
Tssr52948	transcription start site region 52948	1713 bp downstream
Tssr52949	transcription start site region 52949	1742 bp downstream