rs253907816 SNP Detail

Summary

• ID
  rs253907816
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23936969 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAAACGAA ACAAAGTGCA
  AACTGGAACC CAAAGGCTCT TTTCAGAGCC ACCCACAGTT TCTGTAAAAG CAGCTGTTAC
  TTTTCTACTG TCTTGGAAAC TTTGTTTTTC AAAGATTTAT CTAGTTACAA AGTATACTGT
  TGCTTTCTTC AGTAGGCATC AGTTCTCACT TCAGTTGTTG CTGGTATTTG AGCTCATGTC
  M
  TGGAAACTGC CTTTAAATTA AACAGTAATT TACATATTAC AATAAGTGGC CAAAAGTAAT
  GGACTGTCAG GCTTTATGTC ATAAGCATTG CCTGTCTTGA TTCCTTTTTG GTCTGTTCTT
  GGGTTTTGTC TTTTTTTGTT TTTGTTTTCG TGCTATATAT TTGTGCTCTC TTGTGTAATT
  TCCACTACAG GTCATATCCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324291420	CHEV_13_23844855	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253907816					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23936969 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5374	CpG island 5374	1330 bp distal
Gm54518	predicted gene, 54518	1471 bp upstream
H2ac4	H2A clustered histone 4	1388 bp downstream
H3c2	H3 clustered histone 2	146 bp downstream
Rr403663	regulatory region 403663	1846 bp downstream
Rr403664	regulatory region 403664	600 bp downstream
Rr475938	regulatory region 475938	1850 bp distal
Rr475939	regulatory region 475939	1593 bp distal
Rr475940	regulatory region 475940	1356 bp distal
Rr475941	regulatory region 475941	709 bp distal
Rr475942	regulatory region 475942	683 bp proximal
Tssr118860	transcription start site region 118860	1900 bp downstream
Tssr118861	transcription start site region 118861	1868 bp downstream
Tssr118862	transcription start site region 118862	1779 bp downstream
Tssr118863	transcription start site region 118863	635 bp downstream
Tssr121747	transcription start site region 121747	776 bp upstream