rs253911452 SNP Detail

Summary

• ID
  rs253911452
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:123259566 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGTGGGTT TAAAACAAAG
  AGGAGCACAT GAAATTGGGA GGGAAAATCA GTGAGGTGGA TAGGAGCAGG TTGTAGTGAG
  GAGAGTAAGG ATGGGTTCAT TAAAAGTGAA TTATATAAAT GCACAAAATT TTCAAACAAA
  AATAATTTTA AAAAGAGAAG TCAAATGTGT GGTTGTAAGA TATATTTGTA TTTAAAATAA
  R
  GTTATCAATT TCAAAATCAG ATTGTGAGAA AGTCTAATAG AAGTGCTCGT AATGAGTGCT
  AATATGTCAA ATTAATTTAT TTAGTTTAAT TTTCCTACTC AAGGATACAT GTTTATTACA
  ATGTGTGACT GCTGCTGAAG GTTCCTTTAG GGCTTTGTCT GGAAGAAACA TGGTCTATAT
  TGACAGAATA TCATGCAATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369922373	MGP_WTSI_6_123232625	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253911452					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369922373	MGP_WTSI_6_123232625	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:123259566 () rs orientation: forward

Symbol	Name	Function Class
Clec4e	C-type lectin domain family 4, member e	within coordinates
Tssr58808	transcription start site region 58808	123 bp upstream
Tssr58809	transcription start site region 58809	785 bp upstream
Tssr58810	transcription start site region 58810	811 bp upstream
Tssr58811	transcription start site region 58811	847 bp upstream
Tssr63019	transcription start site region 63019	1035 bp upstream
Tssr63020	transcription start site region 63020	103 bp upstream
Tssr63021	transcription start site region 63021	25 bp upstream
Tssr63022	transcription start site region 63022	7 bp downstream
Tssr63023	transcription start site region 63023	35 bp downstream
Tssr63024	transcription start site region 63024	138 bp downstream
Tssr63025	transcription start site region 63025	191 bp downstream
Tssr63026	transcription start site region 63026	202 bp downstream
Tssr63027	transcription start site region 63027	251 bp downstream
Tssr63028	transcription start site region 63028	264 bp downstream
Tssr63029	transcription start site region 63029	295 bp downstream
Tssr63030	transcription start site region 63030	325 bp downstream
Tssr63031	transcription start site region 63031	382 bp downstream
Tssr63032	transcription start site region 63032	406 bp downstream
Tssr63033	transcription start site region 63033	431 bp downstream
Tssr63034	transcription start site region 63034	450 bp downstream
Tssr63035	transcription start site region 63035	471 bp downstream
Tssr63036	transcription start site region 63036	525 bp downstream
Tssr63037	transcription start site region 63037	555 bp downstream
Tssr63038	transcription start site region 63038	592 bp downstream
Tssr63039	transcription start site region 63039	651 bp downstream
Tssr63040	transcription start site region 63040	709 bp downstream
Tssr63041	transcription start site region 63041	758 bp downstream
Tssr63042	transcription start site region 63042	783 bp downstream
Tssr63043	transcription start site region 63043	793 bp downstream
Tssr63044	transcription start site region 63044	815 bp downstream
Tssr63045	transcription start site region 63045	906 bp downstream
Tssr63046	transcription start site region 63046	925 bp downstream
Tssr63047	transcription start site region 63047	948 bp downstream
Tssr63048	transcription start site region 63048	976 bp downstream
Tssr63049	transcription start site region 63049	991 bp downstream
Tssr63050	transcription start site region 63050	1015 bp downstream
Tssr63051	transcription start site region 63051	1067 bp downstream