rs253923547 SNP Detail

Summary

• ID
  rs253923547
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:128847574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAAGACAG AGCCAAGAGC
  AGATTGCAAC AGAAGACCGA GCTAAGAGCA GATTGCAACA AGGTAGGTAT TGTATAAGGT
  CTAGCATCCT TCCTACCCTT TGGGAATGCA CCTGTCTTTT GACTGTGTCA AGGTGCAGGG
  CTGGCTGTAG GATGCAGACC CAAGGTACCA GGTGCCCAGG TTGCTCAAAA GCTGAAGGGT
  R
  GGGATGGGGG TGGGGGTTTG TTTAAAGCAG TGGGACTGGG GGTGTGGGCA GGGTCTGTTC
  TGAGTAAGCC TGAGAGAAAC AATTTAGACT AAAGGCCATT GCCACCTCCT GGTGAGGCAC
  AGGAAGTCAA GTAACTCTAC ACCTGGAACA TGGGGGAACA TTGGAGGACC ATTGGTAAAC
  ACCCTCTCTG CACAAGACAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321688108	CHEV_5_129276385	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253923547					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:128847574 () rs orientation: forward

Symbol	Name	Function Class
Gm42875	predicted gene 42875	within coordinates
Rimbp2	RIMS binding protein 2	within coordinates
Rr621176	regulatory region 621176	1021 bp distal
Rr621177	regulatory region 621177	827 bp distal