rs253927246 SNP Detail

Summary

• ID
  rs253927246
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:20782573 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTGAATTA TTTGCTATTA
  GCTAAGCGTG GTACAATATA TCATGGTTAT TATAAAGGGC TGGTGTCTTG GGTCCAAATT
  TAGTTTCTTA TTACTGATAG TAGCGTGCCT TAATTTCTTC ATCAGACATG ATAATAATTA
  CTACGATGAT CCTATCTTGA ATTACTGTGA AGATTAATAA ATTGGTTCAC ACACCTTCCC
  Y
  AGAAGAACAC TCAGCACATT CTAAGCAACA GTTTTGAGTG TCTGCTGTTG ACCAAGAGCT
  GAGAATTAGC AGGGGCATTG CTGAAATTAC ATTGTAGCGA GGAGAGGCAG ACATAAGCAA
  ACTTGCAAGT ATATAGGTAG TAAGACAGAA AAATAAGGCG GGGAGGAGGA GAGTGCAGGA
  TGATGCTATT AAAGTAGGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382653364	MGP_WTSI_11_20732576	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253927246					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382653364	MGP_WTSI_11_20732576	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:20782573 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2627	CpG island 2627	893 bp distal
Gm12037	predicted gene 12037	631 bp upstream
Lgalsl	galectin like	1517 bp upstream
Rr443483	regulatory region 443483	1177 bp distal
Rr443484	regulatory region 443484	642 bp distal
Rr443485	regulatory region 443485	373 bp distal
Tssr3438	transcription start site region 3438	1772 bp upstream
Tssr107046	transcription start site region 107046	1520 bp upstream
Tssr107047	transcription start site region 107047	1499 bp upstream
Tssr107048	transcription start site region 107048	1384 bp upstream
Tssr107049	transcription start site region 107049	1354 bp upstream
Tssr107050	transcription start site region 107050	1308 bp upstream
Tssr107051	transcription start site region 107051	1241 bp upstream