rs253929214 SNP Detail

Summary

• ID
  rs253929214
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:36353073 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTGAGCAAA CACAGGCATG GATGGCTGCA
  CTTGTGTGAA CTGCCAAAGG GAGAGCCTTT CAGGAGCTGG ATGTCCTAAC GCTGAGCCCC
  TGGGCCATGT GGCTATGCGA CCGGTGCTCT CAAGGGACTT CCTTtcttcc tcctctccct
  Y
  ctcccctcct cctcctctcc ctcctcccct cctcctctcc ctcctcctTT GTTTTTTTTT
  TTTTTTGTTT Gttttgtttc attttgatac agggtttctc tgtaaagccc tggctgtcct
  ggaactcact ttttagacta gactggcctc                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319688348	CHEV_1_36370837	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253929214					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:36353073 () rs orientation: forward

Symbol	Name	Function Class
Arid5a	AT-rich interaction domain 5A	within coordinates
Gm70518	predicted gene, 70518	within coordinates
Rr409287	regulatory region 409287	968 bp proximal
Rr409288	regulatory region 409288	1094 bp proximal