rs253936565 SNP Detail

Summary

• ID
  rs253936565
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:73346726 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAACCAGT CCTAGGTTTC
  CTACCCTTGA AACCTCAGCA GGCAGCTGAA TAACCCCAAG AAGGAGGCCT AGGAACCAGA
  GGAAGGAATC CTAAGTTGGA GATGTGAAAC CTAATTGTTT CACAACTGCT CCTGATTTGC
  TTATGACTGG AACTTTACTT TTCCCATATG GTAAATGGGG ACACTGTATT GGCAGGTGAC
  Y
  ATAAGGATGG ATCTAGGGCA GCTTAGGTTG GAGCCAACCT GATGAGGACC TTCTTAAGAT
  CCTTCTAGAG CCTGACAGTA CTCCTCTGCC TTGTTCCATA GGCTTTCACT GACCTATGAG
  CCACTCTTTG GTGCAACAGT GACATTCAAG TAAGTTCTGT TGGCTGAAGT TTGTCAGGGC
  TGGCGTGTCT TCACTCTGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss403782908	MGP_WTSI_X_71548459	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253936565					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403782908	MGP_WTSI_X_71548459	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:73346726 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atp6ap1	ATPase, H+ transporting, lysosomal accessory protein 1			Intron
				Noncoding-Transcript-Variant
Cpgi22795	CpG island 22795			1801 bp proximal
Gdi1	GDP dissociation inhibitor 1			1892 bp upstream
Rr692006	regulatory region 692006			1388 bp proximal
Rr692007	regulatory region 692007			1889 bp proximal
Tssr161326	transcription start site region 161326			719 bp downstream
Tssr161327	transcription start site region 161327			696 bp upstream
Tssr161328	transcription start site region 161328			724 bp upstream
Tssr161329	transcription start site region 161329			818 bp upstream
Tssr161330	transcription start site region 161330			905 bp upstream
Tssr161331	transcription start site region 161331			1040 bp upstream
Tssr161332	transcription start site region 161332			1052 bp upstream
Tssr161333	transcription start site region 161333			1872 bp upstream
Tssr161334	transcription start site region 161334			1972 bp upstream
Tssr163632	transcription start site region 163632			1567 bp downstream