rs253941612 SNP Detail

Summary

• ID
  rs253941612
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:143340169 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GACCAATTT CAAGTGTTCT TCACCACAAG
  TAAAAGATGC CTCAGAAGGC CATATGACCT CATCAGGAAG CCACCACTGG TCTTTTCTAT
  TGGAGGCCTC CGTTAACTCA CGAGTGTATC TCTCCCCGAG GACCCTCTAC AGGCCACGGT
  R
  CCACAAGATC ATCTCACACC AAGCACCGTG GCTGTGCCTC ACACTTCCCC TGAGTGTCTA
  TTAAACATGA CTGTGGGCCT TGCGCTGGGA TGGAGAGGCC CAGGGAGCAG AGATGATTGT
  GTGCCGGATG CTGGATGAGA GAGGTGCAGG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322052897	CHEV_6_143342963	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253941612					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:143340169 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18149	CpG island 18149	within coordinates
Gm67127	predicted gene, 67127	within coordinates
Rr640842	regulatory region 640842	316 bp distal