rs253942740 SNP Detail

Summary

• ID
  rs253942740
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:21135248 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGGGATTA AAGGTGTGTG
  CCACCATGCC CTGTGAAGAA TTTTCTTGAC TGCTAATTGG TGTAAGAGCA CTCTCTGTGG
  GTAGTACCAT CCTAGGTAGC AAATCCTGGG CTGAGCAGAG GCTGGGAACT GAACCAGGAA
  GCTGCTCTCC TTGATGGTCT CTGCTTGGAG CTCCTGCCTT GAGTCCCTGC CCTAACTTCC
  Y
  TCACTGATGG AACTGTAAAT GTAAGCTGAA ACAGGCTTTT TCCTCCCCAA ACTGGTTTTG
  TTCAAGGTAT CAGAGAACAT CCCAGCAGCA TTGAATATAC AGGAGAACCA TGACCTTGTT
  AGGTTTCAGA TCCCGGCAAG CCCTGCCTCT CAGTTGACGT TTGTAAACCT GGCTAGCTCT
  GATTTGCTGT TTCTTAGGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376862692	MGP_WTSI_9_21028396	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253942740					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376862692	MGP_WTSI_9_21028396	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:21135248 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21428	CpG island 21428	1315 bp proximal
Gm16754	predicted gene, 16754	1168 bp upstream
Rr383053	regulatory region 383053	within coordinates
Rr674752	regulatory region 674752	1914 bp distal
Rr674755	regulatory region 674755	637 bp distal
Rr674756	regulatory region 674756	436 bp distal
Rr674757	regulatory region 674757	773 bp proximal
Rr674758	regulatory region 674758	814 bp proximal
Rr674759	regulatory region 674759	1468 bp proximal
Tssr83977	transcription start site region 83977	1411 bp upstream
Tssr83978	transcription start site region 83978	1444 bp upstream
Tssr88378	transcription start site region 88378	999 bp downstream