rs253944829 SNP Detail

Summary

• ID
  rs253944829
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:5639769 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATCATATA GTGCTAGATC
  CCTAATTTTC CTAGACAAGG CATGACCAGC AAGTCTTCAC ATACCTTCAA GGCTCAGATA
  TTGAATGGAT CAAACAGAAA ATTAATGCAA AGGCTTTGAA GACCTTCAAT TTAAACAAAA
  CAAGGATATT CAGTAGGAAG GGAAATGGGA ATTATGAGTG ATCAAAAAGA CAGAATTAAA
  Y
  TTTTCTTATT TTTAAAAAAT AAGATAGCAT TGCCATGTTT GTCCCTTTTA AAAATAAGGA
  ATACATAACT TTAGGATGCC AGAATAACCG GATGAATGCA TACTGAAAAC AATGAACAAT
  TGTGCTAAGA AGAATTTTCA TGCTGAGGAG CAAGTCAGAT CATCGGGTCC AAGATGTGAA
  CTAGATCCTT ACAGGAACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320638393	CHEV_3_5574709	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253944829					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:5639769 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12950	CpG island 12950	1036 bp proximal
Gm6146	predicted gene 6146	1493 bp upstream
Pex2	peroxisomal biogenesis factor 2	Intron
Rr573198	regulatory region 573198	585 bp proximal
Rr573199	regulatory region 573199	1409 bp proximal
Rr573200	regulatory region 573200	1664 bp proximal
Rr573201	regulatory region 573201	1793 bp proximal
Tssr28281	transcription start site region 28281	1170 bp upstream
Tssr32526	transcription start site region 32526	1385 bp downstream
Tssr32527	transcription start site region 32527	1402 bp downstream
Tssr32528	transcription start site region 32528	1463 bp downstream
Tssr32529	transcription start site region 32529	1510 bp downstream
Tssr32530	transcription start site region 32530	1524 bp downstream