rs253945519 SNP Detail

Summary

• ID
  rs253945519
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:3416397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGGG CCCGTTCTCC CCCTTGGACA
  R
  ATTGGGGGGG GGCCGGGGGA GGTCG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322091731	CHEV_7_3367474	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253945519					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:3416397 () rs orientation: forward

Symbol	Name	Function Class
Cacng7	calcium channel, voltage-dependent, gamma subunit 7	within coordinates
Cpgi18210	CpG island 18210	821 bp distal
Gm72265	predicted gene, 72265	within coordinates
Rr641804	regulatory region 641804	330 bp proximal
Tssr64254	transcription start site region 64254	1910 bp downstream
Tssr64255	transcription start site region 64255	1693 bp downstream
Tssr64256	transcription start site region 64256	1668 bp downstream
Tssr64257	transcription start site region 64257	990 bp downstream
Tssr64258	transcription start site region 64258	884 bp downstream
Tssr64259	transcription start site region 64259	479 bp downstream
Tssr64260	transcription start site region 64260	456 bp downstream