rs253949810 SNP Detail

Summary

• ID
  rs253949810
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:100124867 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCAAAAAC CAAAATGTTA
  AAAAAAAAAA AAACCTTAAT TTCTTCAAAT ATTTAACATG TATTCCCTTC TCAAATTAAG
  CCACACATCG TTCAATATTA GTTCCATTTA ATTAAATTCA CTTCCCATCC CACCCTCAAC
  TCCCCACTAA AGCCAGTACA ACCATTAGCA GACTGCAGAG AATCAGCCTG AACTGAGATT
  W
  TCTTAAACAT TATACTCCAA GTCCTTCTCC ACTGTCCCAA CACCCCTACA AATTTTATAC
  TCTTAACCAG TAGTGGAAAT CACGGGTTAA AATGACACCT TTCTAAAAAC TCCCCACCAA
  AACTTTCTCC TGGTTATAGT GAAAAAAATT GCATACGCAC AGCCCCACTA TAAAAAGTAT
  CGAAACCATA ACTCAAGATC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366010008	MGP_WTSI_5_100406027	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253949810					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366010008	MGP_WTSI_5_100406027	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:100124867 () rs orientation: forward

Symbol	Name	Function Class
4930524J08Rik	RIKEN cDNA 4930524J08 gene	1927 bp upstream
Cpgi16102	CpG island 16102	651 bp proximal
Gm17092	predicted gene 17092	678 bp upstream
Gm42127	predicted gene, 42127	1843 bp upstream
Hnrnpd	heterogeneous nuclear ribonucleoprotein D	within coordinates
Rr378342	regulatory region 378342	1430 bp upstream
Rr615369	regulatory region 615369	205 bp proximal
Rr615370	regulatory region 615370	1899 bp proximal
Tssr47472	transcription start site region 47472	1495 bp upstream
Tssr47473	transcription start site region 47473	1563 bp upstream
Tssr47474	transcription start site region 47474	1661 bp upstream
Tssr52063	transcription start site region 52063	415 bp upstream
Tssr52064	transcription start site region 52064	1840 bp downstream
Tssr52065	transcription start site region 52065	1894 bp downstream
Tssr52066	transcription start site region 52066	1906 bp downstream