rs253950938 SNP Detail

Summary

• ID
  rs253950938
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:48529481 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGGGCCCC CTTCACTTTT
  AGACACCAGG CAGTACACCA TTCTTAAAGA AAGGGATTTG GAAGGCAACA ACTCAGAGAA
  CAGAGATACA CTGTTTCCTC AGTAACTTTG GGAGCCCGGG TTAACAATCC TCTATTACAA
  CCATGAAACT AAGGGCTCAG TGTGTATTTC TGCTGAATCT GCTACTTAGC AGACGATGAT
  K
  CGAGGCAGAG GGAGGTCACA TGGGGCTGGC ACCTGAATTT TCAGTTCAGT ATGGTGCCCT
  CAGGAGGTGC TGATCCAAGG GTGGGGTTTC AGTGAACACT GCCAAGGACA GCATTGAGCT
  AACATCTAAA TGCTTCCAGG AGATCTGTCA GGAACAGCAT TTGGAGGCCC AGTAGGTTAA
  AGGGCTGACA TTTTAAAATG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371266102	MGP_WTSI_7_56135103	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253950938					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371266102	MGP_WTSI_7_56135103	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:48529481 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19137	CpG island 19137	750 bp proximal
E2f8	E2F transcription factor 8	Intron
Gm2788	predicted gene 2788	within coordinates
Rr400335	regulatory region 400335	1213 bp upstream
Rr400336	regulatory region 400336	1916 bp upstream
Rr646934	regulatory region 646934	1738 bp distal
Rr646935	regulatory region 646935	353 bp distal
Rr646936	regulatory region 646936	within coordinates
Rr646937	regulatory region 646937	681 bp proximal
Rr646938	regulatory region 646938	1298 bp proximal
Rr646939	regulatory region 646939	1652 bp proximal
Rr646940	regulatory region 646940	1853 bp proximal
Tssr66766	transcription start site region 66766	1759 bp downstream
Tssr66767	transcription start site region 66767	1753 bp downstream
Tssr66768	transcription start site region 66768	1599 bp upstream
Tssr72628	transcription start site region 72628	1639 bp upstream
Tssr72629	transcription start site region 72629	1581 bp upstream
Tssr72630	transcription start site region 72630	1246 bp downstream
Tssr72631	transcription start site region 72631	1259 bp downstream
Tssr72632	transcription start site region 72632	1299 bp downstream
Tssr72633	transcription start site region 72633	1871 bp downstream
Tssr72634	transcription start site region 72634	1908 bp downstream