rs253955039 SNP Detail

Summary

• ID
  rs253955039
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128581459 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCATTTTT CCTCTTCCTC
  CTCCATCACT GTCACCACCA TGCTGCAGAT GAGCTTCAGT GCCTGGAACG TGCTTCTCCG
  GTGCTGCACC ACGGATCTAT ACCGCTACCC CACACCCTTC TTCTTAACAG TATATGCGTC
  ACCGTTAGCA AAGTCTATCT CCCCTTCCTA CATCGCCTCC TTACTCACAG TCCAACAAAC
  K
  ATTTTTTTCC TGAGACAAGA TTTTAGTATG TACATAGCCT AGGCTGGCAG TGAAATTGCC
  ATCCTGGTTC AACCTCTCAA GAGCTGGGTT TACCGGGTTT ATTGGTGTGT GCCACTCCTG
  CTATCAACAG ACACTTTTGA AGGTCTCTTT ATACCTGATC TTGTTCTTAG TTCTTTCTGT
  AGGATAAGCA AAAACACAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382210079	MGP_WTSI_10_128182646	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253955039					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382210079	MGP_WTSI_10_128182646	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128581459 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2418	CpG island 2418	1367 bp distal
Dgka	diacylglycerol kinase, alpha	735 bp upstream
Gm31504	predicted gene, 31504	within coordinates
Gm66065	predicted gene, 66065	379 bp downstream
Rr224483	regulatory region 224483	within coordinates
Rr224484	regulatory region 224484	1741 bp proximal
Rr385481	regulatory region 385481	1735 bp upstream
Rr402364	regulatory region 402364	641 bp downstream
Tssr96440	transcription start site region 96440	768 bp downstream
Tssr96441	transcription start site region 96441	567 bp downstream
Tssr96442	transcription start site region 96442	356 bp downstream
Tssr96443	transcription start site region 96443	867 bp upstream
Tssr99941	transcription start site region 99941	1745 bp upstream
Tssr99942	transcription start site region 99942	1680 bp upstream
Tssr99943	transcription start site region 99943	1618 bp upstream
Tssr99944	transcription start site region 99944	1595 bp upstream
Tssr99945	transcription start site region 99945	1505 bp upstream
Tssr99946	transcription start site region 99946	1481 bp upstream
Tssr99947	transcription start site region 99947	1338 bp upstream
Tssr99948	transcription start site region 99948	1308 bp upstream
Tssr99949	transcription start site region 99949	703 bp upstream
Tssr99950	transcription start site region 99950	532 bp upstream
Tssr99951	transcription start site region 99951	509 bp upstream
Tssr99952	transcription start site region 99952	505 bp upstream
Tssr99953	transcription start site region 99953	468 bp upstream
Tssr99954	transcription start site region 99954	124 bp upstream
Tssr99955	transcription start site region 99955	91 bp upstream
Tssr99956	transcription start site region 99956	643 bp downstream
Tssr99957	transcription start site region 99957	710 bp downstream