rs253958867 SNP Detail

Summary

• ID
  rs253958867
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43448362 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGAAGGGCT GGGCACATGT GGGTGGACCT
  GGAGGGAAGA GGCTCAGGGC TCTGTTTGAG GAAGAGGAGG AAGTTAAAAC TTGGGTCTGA
  GGGAGGAGGG CTAAGGAGGA CTGCTGGATC TGAGGCAGAC AGGCTAGGGC CTGGACTCCT
  R
  GGCTTGGTGG AAGATGAATG GGTTCTGAGG GAGAAGGAGT GGAAAGAACC CCCAAGTACC
  CCCAACTTCC TTCTGGGTTC CAAGATCCAC CCTCACTCCT CACCCCCTCC ACCCCTCCTT
  GTGCAGGAAG TACTCCGTGC GTCTGGGTGA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322197851	CHEV_7_51054308	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253958867					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43448362 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18946	CpG island 18946	1221 bp distal
Klk8	kallikrein related-peptidase 8	within coordinates
Rr646021	regulatory region 646021	1465 bp distal
Rr646022	regulatory region 646022	1351 bp distal
Rr646023	regulatory region 646023	1245 bp distal
Rr646024	regulatory region 646024	621 bp distal
Tssr66051	transcription start site region 66051	1372 bp downstream
Tssr66052	transcription start site region 66052	1352 bp downstream
Tssr66053	transcription start site region 66053	842 bp downstream
Tssr72173	transcription start site region 72173	1405 bp upstream