rs253959527 SNP Detail

Summary

• ID
  rs253959527
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:77575788 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGCAGTGA TGGTGGGGCA
  TGCCTTTAAT CCCAGCACTT GGAAGGCAGA GGCCAGCCTG GTCTACAGGA GTGAGTTCCA
  GGACAGCCAG GGCTGTACCA AAAAAAAAAA AAATCCCTTA TAATACATAG ACAAATGTAT
  ATCTAATTTA ATGAATTTTA AAGCAATTAT TCATGTAATA GCAATAGCAC ATTGGCTGGG
  R
  TATGCTGGTG TGTGTAGGAC TTTAATCCCA GCATTCATGA GGCAGAAACA GGGGGAATCT
  CTTAGTTGGC CAGACACTTC TACTTAGGTA GTTCCAAGCC AATCAGGTTT ACATAGTCTG
  TTTCAAAAAC AAACCAGTCC AAAACAAACA AAACTCCTAG CCAAGTCCCC CAAATATATA
  TTTCGAGGGT ACCCCGTGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383943738	MGP_WTSI_11_77498464	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253959527					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383943738	MGP_WTSI_11_77498464	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:77575788 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3317	CpG island 3317	810 bp proximal
D11Bhm149	DNA segment, Chr 11, Boehm 149	1719 bp distal
D11Bhm150	DNA segment, Chr 11, Boehm 150	1400 bp distal
Gm72230	predicted gene, 72230	within coordinates
Nufip2	nuclear FMR1 interacting protein 2	778 bp upstream
Rr386319	regulatory region 386319	1258 bp upstream
Rr402754	regulatory region 402754	671 bp upstream
Rr451737	regulatory region 451737	703 bp proximal
Rr451738	regulatory region 451738	1533 bp proximal
Tssr103164	transcription start site region 103164	791 bp upstream
Tssr103165	transcription start site region 103165	1170 bp upstream
Tssr103166	transcription start site region 103166	1199 bp upstream
Tssr103167	transcription start site region 103167	1267 bp upstream
Tssr109342	transcription start site region 109342	1016 bp downstream