rs253978579 SNP Detail

Summary

• ID
  rs253978579
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:32421501 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAAGTAGG GGCCTTACCC
  GCTAGCTCAT ACACATACAT ACACTCGATG TTCCAAATTT GCTGCCCCTG ATCCTACAAC
  TTACTTCAAA CAGCTCAGGC ATTTCCTTCT CTGGCCCAGG AAAAAGCAAG TAATCCCAAG
  ATACTTGTTT CATAGAAATG TAAATCTCAT GACAGAGAAA ATGGCCCCAC AAATTAGAGC
  W
  TTTTTTGTGA ATCACTGGGT CTTATGAGAT TCAGTAGCCC CCCTCAAATA AATAAATAAA
  TAAATTTTTA AAATAAAATA AATGAAAGAA AAAGAAACCG GTCATATTCA CCACCTTTAC
  TAAAGGACAA AAACAAATCT CACTGACTTG TGGCTGAAAC CTACTTTTGT GATTGTGTGT
  TGCTGGTCTG TTGACAGAAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357463423	MGP_WTSI_3_32266274	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253978579					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357463423	MGP_WTSI_3_32266274	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32421501 () rs orientation: forward

Symbol	Name	Function Class
4930429B21Rik	RIKEN cDNA 4930429B21 gene	within coordinates
Cpgi13055	CpG island 13055	993 bp distal
Rr374783	regulatory region 374783	1416 bp downstream
Rr374784	regulatory region 374784	1984 bp upstream
Rr574946	regulatory region 574946	1685 bp distal
Rr574947	regulatory region 574947	1863 bp distal
Rr574948	regulatory region 574948	1184 bp distal
Rr574949	regulatory region 574949	1662 bp distal
Tssr28745	transcription start site region 28745	1999 bp downstream
Tssr32925	transcription start site region 32925	1926 bp upstream
Tssr32926	transcription start site region 32926	1730 bp upstream
Tssr32927	transcription start site region 32927	1661 bp upstream
Tssr32928	transcription start site region 32928	1439 bp upstream
Zmat3	zinc finger matrin type 3	1687 bp upstream