rs253978806 SNP Detail

Summary

• ID
  rs253978806
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:47233814 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCGTGTTGT AAAAGCACGA
  ATACTTGAGT TTGTATCCCT GGAACCTACA TAAAAGCTGG GTGATAGACA GATATCTATA
  ACTCCAGCCC TGAATGGGGA AAGCAGAGAC CTATGGATCC CAGAAGGTCA CTAGCCAGCC
  AGTCTAGCTG AAAACCATCA GCTCCAGATG TGGCGAGGGC CCCTTTCCCC AAAACTAAGG
  W
  AGAGAGTAAT AGAGCATCGA CTGCTACCCC CAGATGTGAA CGCACAGCTG AGAACGCATC
  CTGAGTGTGC ACACATACAC ACGCATGTCC ACATGAAAAA TAACCGTTCC AGACTAGTTC
  GGCCAGTCAT GGTGGTCCAC ATCTATAATC CCAGCACTCA TCATAAGTTC CAAGCCAGCC
  TGGGACACAC AGTAAGGCCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss403418217	MGP_WTSI_X_45498114	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs253978806					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403418217	MGP_WTSI_X_45498114	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:47233814 () rs orientation: forward

Symbol	Name	Function Class
Gm61910	predicted gene, 61910	1160 bp upstream
Rr690987	regulatory region 690987	1315 bp distal
Rr690988	regulatory region 690988	670 bp distal
Rr690989	regulatory region 690989	1203 bp proximal
Sash3	SAM and SH3 domain containing 3	1499 bp upstream
Tssr160884	transcription start site region 160884	1522 bp upstream
Tssr160885	transcription start site region 160885	1552 bp upstream
Tssr160886	transcription start site region 160886	1612 bp upstream
Tssr163270	transcription start site region 163270	1298 bp upstream
Tssr163271	transcription start site region 163271	1243 bp upstream