rs253988253 SNP Detail

Summary

• ID
  rs253988253
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:72866851 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCTCTCTT GCACATTACC
  TCTTATTCTT TCTAATAGAG AAGGTAAGAT CACAGCAAAA ATTTTGGGCT CCCGAGGCCA
  CCTCAATACC ACTACACTAC TATGATTGAC ACAATCTCCC CTTCTACTCC CGCCACGTTC
  CTGAAGGTTT TTCCTCTATT CATCCAGGAA CCTACAGGTT CTCCCCCAGC CAACACCTGC
  K
  CGCACTAATT CCCTGGTTCT GATCAACAAG TTCAATAGCT GGGGCACAAG TCACTAGACT
  CACCTGTCTG CTCCCACTTT GGCTCCTGGT CCCGACTCCC TCTTTTCTCT ACACTCAGCC
  CTAGTATATT TCAGTGCACA TCATCCTGGA CACATTTCAC TAAAGTACTC TCAGGGTGCA
  CACACAGAAA GTATAGACGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss403776361	MGP_WTSI_X_71068584	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G	G	G	G	T	G	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs253988253					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G	G	G	G	T	G	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403776361	MGP_WTSI_X_71068584	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:72866851 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22781	CpG island 22781	164 bp proximal
Cpgi22782	CpG island 22782	895 bp proximal
Pdzd4	PDZ domain containing 4	within coordinates
Rr8723	regulatory region 8723	within coordinates
Rr10008	regulatory region 10008	1851 bp distal
Rr395204	regulatory region 395204	1082 bp downstream
Tssr163577	transcription start site region 163577	1108 bp downstream
Tssr163578	transcription start site region 163578	1160 bp downstream
Tssr163579	transcription start site region 163579	1190 bp downstream
Tssr163580	transcription start site region 163580	1304 bp downstream
Tssr163581	transcription start site region 163581	1656 bp downstream
Tssr163582	transcription start site region 163582	1693 bp downstream
Tssr163583	transcription start site region 163583	1748 bp downstream