rs253990530 SNP Detail

Summary

• ID
  rs253990530
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:142201270 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTTT CCTTCTGAGG CCAGGTACTC
  Y
  GAGGCTGCAT GCTCAAGTCA GTCAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321002336	CHEV_3_142158473	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253990530					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142201270 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gbp5	guanylate binding protein 5			Intron
				Noncoding-Transcript-Variant
Rr398083	regulatory region 398083			1758 bp downstream
Rr398084	regulatory region 398084			991 bp upstream
Rr586444	regulatory region 586444			1261 bp distal
Rr586445	regulatory region 586445			1867 bp distal
Rr586446	regulatory region 586446			901 bp proximal
Rr586447	regulatory region 586447			1402 bp proximal
Tssr32047	transcription start site region 32047			1263 bp upstream
Tssr32048	transcription start site region 32048			1282 bp upstream
Tssr32049	transcription start site region 32049			1306 bp upstream
Tssr32050	transcription start site region 32050			1364 bp upstream
Tssr32051	transcription start site region 32051			1415 bp upstream