rs253990888 SNP Detail

Summary

• ID
  rs253990888
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:74849589 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTTCACAT CATATGGAGA
  TGAATTAGTA ATCATAAATT TTCCAGTAAA AATATTCCAG AGCCAGATGG CTTTAGAGAT
  AACATTTGCC AAAATGTTTA AAGAACAAAT ACTGGTCTTT CTCATCTCTT TAAGAAATTC
  ATAATGAGAA AGCACCTTCT AACTTATTTT AAAGGTTATC AGTAGCTTAA TGGTAAAGAC
  W
  GAAAAAAATT ACAAGAATAA TTATATAGGT CAATATTCTT AATGAAATTA TATAAAAAAA
  TTCTTCAACC AACCCAAAGC CATTAGCTCA TTTAAAAGAT CTTACAGGAT TGCCAGTTAA
  GATTTTTTTC CCCTGAGATT CAAGGATATT CAACATATGA AGATAAATTA ATCATATTAA
  TAGTATAAAT CCTATATCGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ
ss386514440	MGP_WTSI_12_75903802	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	A	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	A	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ
rs253990888					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	A	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss386514440	MGP_WTSI_12_75903802	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:74849589 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4766	CpG island 4766	1118 bp proximal
Tssr113890	transcription start site region 113890	1050 bp upstream
Tssr113891	transcription start site region 113891	1322 bp upstream
Tssr113892	transcription start site region 113892	1405 bp upstream
Tssr113893	transcription start site region 113893	1455 bp upstream
Tssr113894	transcription start site region 113894	1508 bp upstream
Tssr113895	transcription start site region 113895	1566 bp upstream
Tssr116673	transcription start site region 116673	1153 bp downstream