rs253992233 SNP Detail

Summary

• ID
  rs253992233
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164722096 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTATGTGA TCCCGCCCAT
  GTTCCTCCAA TCCCGGAATC GGATGCATTT TCTAGTCCGA GTTCCGCTGC TTGCGCAGAT
  ACAGTTGTTT GTCTCTAGAC TACGCTGCGC TTCTCCGACT TTGGTATGCG TGGGGGTCCG
  GAAGGCACAG GCTAAGTGAA AACAGTCACT TAATGGGAGC AGCAGCGAGA GTCCACAGAA
  Y
  GCTAGACTAC GGTGCAGGGG TCAGATGGTT CTGACGTAGG TGTCAGGACG GCAGCACGGC
  CTTGAACTTG GGTCTGGCCA ACTTCAGAGC TGGCGTTTTG GCCAGAGACC TGCTGCACCT
  ATCTACGCGA GTTTATCTTA TTTTTAAAAG ACAGGGTCTC TGTGTAGCCC TGGCTATCCT
  GTAACTCACT ATGTGGAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356442876	MGP_WTSI_2_164705676	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253992233					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356442876	MGP_WTSI_2_164705676	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164722096 () rs orientation: forward

Symbol	Name	Function Class
4930445K14Rik	RIKEN cDNA 4930445K14 gene	within coordinates
Cpgi12676	CpG island 12676	within coordinates
Gm75548	predicted gene, 75548	377 bp upstream
Pcif1	phosphorylated CTD interacting factor 1	Intron
Rr397480	regulatory region 397480	665 bp downstream
Rr397481	regulatory region 397481	72 bp downstream
Rr569749	regulatory region 569749	1557 bp distal
Rr569750	regulatory region 569750	1492 bp distal
Rr569751	regulatory region 569751	809 bp distal
Rr569752	regulatory region 569752	388 bp distal
Rr569753	regulatory region 569753	773 bp distal
Rr569754	regulatory region 569754	within coordinates
Tssr21683	transcription start site region 21683	778 bp downstream
Tssr21684	transcription start site region 21684	137 bp downstream
Tssr21685	transcription start site region 21685	115 bp downstream
Tssr27592	transcription start site region 27592	372 bp upstream