rs253997825 SNP Detail

Summary

• ID
  rs253997825
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:7348282 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTGAACTT GTGGGCTCAG
  ATGACCCTTC TGTATCGCCC TCCTCAGCAG CTGGCTCTAT TTTCTAACAT TATTATTACT
  TTGAATTCAT TCAAGTTTTC TACTGTGTCA AGATTTTCCC ACTGCTGGGG ACTAACCCTA
  GACCTGCTAG CATGCTAGAT AATTGCTGTA CCACTAAACT ACCTTCCCCA ATCAAGTACC
  Y
  GTATATACTA GATGCTAAAA TGGCTCCTTA AAAACCTAGA AGCAGGTCTG AAGAAGGAGA
  ATAATAAATA GTTCTTCCTC TGGAATTTTG GTAATCTGAC TAATCATTTA TGTTTTAAAT
  AGCGTAGGAA ATTATTTTTT CCTCCTTATA ATTGATTCCC TAGGTAATAA TAATAATAAT
  AATGTAGCCT GTGATTAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376560237	MGP_WTSI_9_7348282	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253997825					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376560237	MGP_WTSI_9_7348282	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:7348282 () rs orientation: forward

Symbol	Name	Function Class
Mmp12	matrix metallopeptidase 12	within coordinates
Tssr83684	transcription start site region 83684	872 bp downstream
Tssr83685	transcription start site region 83685	809 bp downstream
Tssr83686	transcription start site region 83686	760 bp downstream
Tssr83687	transcription start site region 83687	742 bp downstream
Tssr83688	transcription start site region 83688	45 bp downstream
Tssr83689	transcription start site region 83689	286 bp upstream
Tssr83690	transcription start site region 83690	322 bp upstream
Tssr83691	transcription start site region 83691	341 bp upstream
Tssr83692	transcription start site region 83692	372 bp upstream
Tssr83693	transcription start site region 83693	408 bp upstream
Tssr83694	transcription start site region 83694	434 bp upstream
Tssr83695	transcription start site region 83695	506 bp upstream
Tssr83696	transcription start site region 83696	561 bp upstream
Tssr83697	transcription start site region 83697	620 bp upstream
Tssr83698	transcription start site region 83698	775 bp upstream
Tssr83699	transcription start site region 83699	825 bp upstream
Tssr83700	transcription start site region 83700	873 bp upstream
Tssr83701	transcription start site region 83701	918 bp upstream
Tssr83702	transcription start site region 83702	955 bp upstream
Tssr83703	transcription start site region 83703	1438 bp upstream
Tssr83704	transcription start site region 83704	1470 bp upstream
Tssr83705	transcription start site region 83705	1724 bp upstream
Tssr83706	transcription start site region 83706	1748 bp upstream
Tssr83707	transcription start site region 83707	1783 bp upstream
Tssr83708	transcription start site region 83708	1804 bp upstream
Tssr83709	transcription start site region 83709	1824 bp upstream
Tssr88064	transcription start site region 88064	408 bp downstream
Tssr88065	transcription start site region 88065	509 bp downstream
Tssr88066	transcription start site region 88066	1830 bp downstream