rs253998117 SNP Detail

Summary

• ID
  rs253998117
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:73056498 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGGCCCCG TGGTTCGGTT
  CCCGACCCGT CCAGCTCCCC GCCCCAGGCC CGCCGTGCTG GGCCCCACAG CTATGCGCTC
  GGGAACGGCG GGAGGAGCGC TGCGGGAGGA CGGAGACCCG TTGCAGGCCG AGCCTGGGCC
  CCCGCACACG TCCCGGTGGC GCTGCTCGGG TGCACTGGGC CTCCCGGCCC CGAGGCCCTG
  Y
  CCGGCCGCCC CGAGGCTACG CCGCGGCCCC ACAGGCCCCG CCGCCCTCGC CTGCCCCGCC
  CGCCAACCGC CAACCGCCGC GGCACGAGTG CCGGGCGCCG CGCGGACTCA CCGGGGCCGG
  CTCCCGAGTA CATGGTGGCG TTGCCGAGGG CCGCGGCCGA GGGCCGGCCG CGCGCTCCAC
  GGGCCCCGAC GCCGCGAGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394546498	MGP_WTSI_15_73015079	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253998117					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394546498	MGP_WTSI_15_73015079	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:73056498 () rs orientation: forward

Symbol	Name	Function Class
Ago2	argonaute RISC catalytic subunit 2	within coordinates
Cpgi7161	CpG island 7161	within coordinates
Rr404436	regulatory region 404436	321 bp upstream
Rr504021	regulatory region 504021	276 bp proximal
Rr504022	regulatory region 504022	588 bp proximal
Rr504023	regulatory region 504023	802 bp proximal
Rr504024	regulatory region 504024	1777 bp proximal
Tssr131527	transcription start site region 131527	1978 bp downstream
Tssr134684	transcription start site region 134684	214 bp downstream
Tssr134685	transcription start site region 134685	596 bp downstream
Tssr134686	transcription start site region 134686	621 bp downstream
Tssr134687	transcription start site region 134687	653 bp downstream
Tssr134688	transcription start site region 134688	672 bp downstream