rs253998494 SNP Detail

Summary

• ID
  rs253998494
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:160902088 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAGATAAGA AACGAGTATG ATGTAGAAAA
  GGTGGAGAGT AGAAAAGAGA GAGAGTAAGA ATGTGCATGT AAGAGAACAA TGTGCATGAA
  TTAACttttt atatattttt tttatatttt tttttCTTCT TGTTCCGGCC TCGCTATCTC
  M
  GGCCCaaaga tttatttatt tattttatgt attagtacac tgtagctgtt ttcagacaca
  ccagaaaagg gcgtcagatc tcattatgga tggttatgag ccaccatgtg gttgctggga
  tttgaatcag gacctctggc agagcagtca                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320080217	CHEV_1_163004649	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253998494					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:160902088 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cenpl	centromere protein L			Intron
				Noncoding-Transcript-Variant
Rr396459	regulatory region 396459			1769 bp upstream
Rr421753	regulatory region 421753			1773 bp distal
Rr421754	regulatory region 421754			1716 bp proximal