rs254003990 SNP Detail

Summary

• ID
  rs254003990
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:24241569 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGGAGATT CTGGGGGATT
  CTATAAGCAC CAACTAGTCT TACCACAAGG CTTAAATCCC ATGGGTCTCA AGCTTTTCTG
  AGGTCAAGAC CTCAATTTTC TTCATTCTAA CTCTTTATCT TCAAACAGTG CTTTGGGCAA
  ACATGCCTTA CCACCTAAAC TTGGAAAACC TGGTCTGTTC TAGAAACCAG AATATTTGCT
  M
  TGCTTTGCTG TTTGTGTCTG TGGTATATGT ATATGATGTG TGTATGTGGC ATATGTATAT
  GATGTGTGTA TGTGGCATAT GTGATTATGT GTCTGTGTGT GTGTGTGTGC ACGCGCGCAT
  GTGCACACAT GTGGGAGCAT AGGCCAAAGG TAAATACTGG ATGTCTTCTT TAATAGTTTT
  CTATCTCTCT TAAAAACTTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324294185	CHEV_13_24149455	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254003990					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:24241569 () rs orientation: forward

Symbol	Name	Function Class
4933427I18Rik	RIKEN cDNA 4933427I18 gene	1839 bp upstream
Carmil1	capping protein regulator and myosin 1 linker 1	within coordinates
D13Ertd224e	DNA segment, Chr 13, ERATO Doi 224, expressed	313 bp proximal
Tssr121764	transcription start site region 121764	1703 bp downstream
Tssr121765	transcription start site region 121765	1734 bp downstream