rs254005226 SNP Detail

Summary

• ID
  rs254005226
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70701786 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGAAGAGG TGTGACTCTT
  ATTCTAAAAT TTGTCACAAA ATGTCAAAAT GAGAGACTCT GTAGGAACGA GTCCTTGACA
  GACAGCTCAA GGGGTTTTTT TCCTTTGTCT CATTTCTACA TGAAAGTAAA TTTGAAATGA
  TCTTTTTTAT TATAAGAGTA GAAATACAGT TGGGTTTGAA CTATATGTTT TAATGGCCAC
  S
  GTTTTGTAAG ACATTTGGTC CTTTGTTTTC CCAGTTATTA CTCGATTGTA ATTTTATATC
  GCCAGCAATG GACTGAAACG GTCCGCAACC TCTTCTTTAC AACTGGGTGA CCTCGCGGCT
  GTGCCAGCCA TTTGGCGTTC ACCCTGCCGC TAAGGGCCAT GTGAACCCCC GCGGTAGCAT
  CCCTTGCTCC GCGTGGACCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368707583	MGP_WTSI_6_70674796	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254005226					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368707583	MGP_WTSI_6_70674796	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70701786 () rs orientation: forward

Symbol	Name	Function Class
Gm68839	predicted gene, 68839	1644 bp downstream
Igk	immunoglobulin kappa chain complex	within coordinates
Igkc	immunoglobulin kappa constant	1633 bp upstream
Igkj2	immunoglobulin kappa joining 2	1848 bp downstream
Igkj3	immunoglobulin kappa joining 3	1542 bp downstream
Igkj4	immunoglobulin kappa joining 4	1217 bp downstream
Igkj5	immunoglobulin kappa joining 5	879 bp downstream
Rr158	regulatory region 158	1149 bp proximal
Rr399684	regulatory region 399684	333 bp upstream
Rr399685	regulatory region 399685	745 bp upstream
Rr399686	regulatory region 399686	1709 bp upstream
Tssr56952	transcription start site region 56952	1951 bp downstream
Tssr56953	transcription start site region 56953	1255 bp downstream
Tssr56954	transcription start site region 56954	1123 bp downstream
Tssr56955	transcription start site region 56955	902 bp downstream
Tssr56956	transcription start site region 56956	1006 bp upstream
Tssr56957	transcription start site region 56957	1628 bp upstream
Tssr56958	transcription start site region 56958	1675 bp upstream
Tssr56959	transcription start site region 56959	1693 bp upstream
Tssr56960	transcription start site region 56960	1716 bp upstream
Tssr56961	transcription start site region 56961	1730 bp upstream
Tssr56962	transcription start site region 56962	1738 bp upstream
Tssr56963	transcription start site region 56963	1787 bp upstream
Tssr56964	transcription start site region 56964	1802 bp upstream
Tssr56965	transcription start site region 56965	1808 bp upstream
Tssr56966	transcription start site region 56966	1819 bp upstream
Tssr56967	transcription start site region 56967	1834 bp upstream
Tssr56968	transcription start site region 56968	1858 bp upstream
Tssr56969	transcription start site region 56969	1894 bp upstream
Tssr56970	transcription start site region 56970	1907 bp upstream
Tssr56971	transcription start site region 56971	1927 bp upstream
Tssr56972	transcription start site region 56972	1953 bp upstream
Tssr56973	transcription start site region 56973	1991 bp upstream
Tssr61321	transcription start site region 61321	1680 bp downstream
Tssr61322	transcription start site region 61322	1845 bp downstream
Tssr61323	transcription start site region 61323	1860 bp downstream
Tssr61324	transcription start site region 61324	1950 bp downstream