rs254013065 SNP Detail

Summary

• ID
  rs254013065
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:79212541 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAGACAGG GGCACCAGGA
  GGTTTGGGAA AGGGCCGTCA GGCCCCGCCC CCGCCGCGCC GTCACTCACC TCGGCTTACT
  CAGCACTTCT CAGCCCTCCT ACTTCCGCAA ACTGACGCGC CCCGCCCACG TGACGACACT
  ACGGCTCTCC ACCAATCCAC CGAGCCCATG CCGCAGGCAG GCTGTGGCCC CGACCCCAAG
  M
  GTGGACCTCG CACGCGGTCA GGCGCCGCCA TCTTCTATAA CTGCCCAATG GAAGCCGCTT
  CTGTTGCCAG GGGGCGGTCG GGCTTCTGAC TGAAGCCAAT TCTGCGTGGC TGATGGGGGC
  CATGCCTCGG GCGGGCGGAA GTTTCTCGTG AGGGCAGTTT GGCTGACGTG TTGATAAAGG
  GCAGGAGGCT GTTCCCGGCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394675157	MGP_WTSI_15_79158771	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254013065					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394675157	MGP_WTSI_15_79158771	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:79212541 () rs orientation: forward

Symbol	Name	Function Class
2310026G15Rik	RIKEN cDNA 2310026G15 gene	within coordinates
Cpgi7329	CpG island 7329	within coordinates
Pla2g6	phospholipase A2, group VI	within coordinates
Rr404497	regulatory region 404497	within coordinates
Rr505593	regulatory region 505593	388 bp distal
Rr505594	regulatory region 505594	600 bp distal
Rr505595	regulatory region 505595	within coordinates
Rr505596	regulatory region 505596	1102 bp proximal
Rr505597	regulatory region 505597	1243 bp proximal
Rr505598	regulatory region 505598	1601 bp proximal
Rr505599	regulatory region 505599	1732 bp proximal
Tssr132082	transcription start site region 132082	747 bp downstream
Tssr135328	transcription start site region 135328	191 bp upstream
Tssr135329	transcription start site region 135329	150 bp upstream
Tssr135330	transcription start site region 135330	80 bp upstream