rs254019178 SNP Detail

Summary

• ID
  rs254019178
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:64607551 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACTCATTC TCCGAGAAAA
  GGACATTTAT AAAGATCTGG CCACTCGGCC ATGATCCTAT CATTCGTTGT CCCAAGAGAG
  ACTGTACGGT GAACTAGAAG GGCAATGCGC TGTCTGAAAT GGGCCCTTTA CAAAGCAGGC
  ACAACCCAAC ACTTACTACT TTCGGGCTCA AGGATCCTGC TATTCTATCC CAGGATCCCC
  S
  CCCCCCCCTC CCCCGTTACT GGTGCTTTGT GGTAAAAGTA TAGGAGATGC AGAGGACAGC
  TCCATTCCTT GAATGCTTAG TGTTTTAAAA ATTAAGGCAG AGAAGGATGC CTGTGATCAT
  TTGTGTGTAG GAATAAATGC ACAGGAGAGA CAGGGTTGCC TGGTTTGCTG CTGGGGAGTG
  CTGCTTTTTA GGAACTGTGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CZECHII/EiJ	JF1/MsJ	LP/J	MA/MyJ	NZW/LacJ	PWK/PhJ	RF/J	SEA/GnJ	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
ss388884010	MGP_WTSI_13_64561045	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	G	G	G	G	G	G	G	G	G	G	G	G	C	G	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CZECHII/EiJ	JF1/MsJ	LP/J	MA/MyJ	NZW/LacJ	PWK/PhJ	RF/J	SEA/GnJ	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
rs254019178					SNP	C	C	G	G	G	G	G	G	G	G	G	G	G	G	C	G	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388884010	MGP_WTSI_13_64561045	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:64607551 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5782	CpG island 5782	1865 bp distal
Cpgi5783	CpG island 5783	716 bp distal
Gm7712	predicted gene 7712	949 bp upstream
Gm31218	predicted gene, 31218	within coordinates
Rr481887	regulatory region 481887	1819 bp distal
Rr481888	regulatory region 481888	912 bp distal
Rr481889	regulatory region 481889	1147 bp proximal