rs254019601 SNP Detail

Summary

• ID
  rs254019601
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:8615813 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TACAAgtac agcttccaat ttttgaccta
  aaggtactga gaaaacagta gttcttcaac agcaattgtg cttcatagtt gcattttcat
  cttcctcagg gtaggagcag ggcaatggca gtgagctgtc actacagtta gccagtctgt
  Y
  atcacatggt tactatatat aaaaacagac ttgctgttgt acttgcccaa ccatgggctt
  tcctaagttt tgagactatt aaattgcagt aggctaagtt ctgatgcctg cagtttgtgt
  actaaatgtg gttttgactt aaaatgtttt                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321463526	CHEV_5_8565813	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254019601					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:8615813 () rs orientation: forward

Symbol	Name	Function Class
Gm72884	predicted gene, 72884	1240 bp upstream
Rr130297	regulatory region 130297	1588 bp proximal
Rundc3b	RUN domain containing 3B	within coordinates
Tssr45118	transcription start site region 45118	1280 bp upstream
Tssr45119	transcription start site region 45119	1300 bp upstream