rs254021313 SNP Detail

Summary

• ID
  rs254021313
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:82422680 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCACCACC TAGACTGGCG
  GCGTCACCCG CCCACTGTGG GCAGCAGAGT CCAAAGGCGC TCAAGCCTAG TTCTCAGCCC
  CTTGCCCAAG AGTCCATCTA CAGACGCTCC CAAGCCGGAG TCCGCCCCAC GCGCACCGGC
  CAGGGAGTGA GGGTGCCGCC GCGGCCACCA CCGCCGCCGC TGCCTTCGCC GCAATCTCCT
  K
  AGGGGCGGAC AGGGGCTCAC GGCCGCAGGT CTCGGCCCTG CCCACCCCCA GCAGCCTCGC
  CCGCCCGGTG CCGGCTCTCC CCGCTCGGGC GCTGGGATGG GCGCACACGG CAGCCGTGGT
  CCCACGCCGC CCGCACAGCC CACCGCAACT CCGCACTACT TCTCGGGGAA GACCAGGGTG
  TGCCAAGGTT AGGCAAAGCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss362190658	MGP_WTSI_4_82150347	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs254021313					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362190658	MGP_WTSI_4_82150347	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:82422680 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14398	CpG island 14398	within coordinates
Gm57123	predicted gene, 57123	1340 bp downstream
Nfib	nuclear factor I/B	within coordinates
Rr594356	regulatory region 594356	1297 bp distal
Rr594357	regulatory region 594357	within coordinates
Rr594358	regulatory region 594358	855 bp proximal
Tssr37680	transcription start site region 37680	1480 bp upstream
Tssr42247	transcription start site region 42247	452 bp downstream
Tssr42248	transcription start site region 42248	779 bp downstream
Tssr42249	transcription start site region 42249	801 bp downstream
Tssr42250	transcription start site region 42250	831 bp downstream
Tssr42251	transcription start site region 42251	927 bp downstream
Tssr42252	transcription start site region 42252	1153 bp downstream
Tssr42253	transcription start site region 42253	1236 bp downstream
Tssr42254	transcription start site region 42254	1275 bp downstream
Tssr42255	transcription start site region 42255	1306 bp downstream
Tssr42256	transcription start site region 42256	1360 bp downstream
Tssr42257	transcription start site region 42257	1390 bp downstream
Tssr42258	transcription start site region 42258	1415 bp downstream
Tssr42259	transcription start site region 42259	1989 bp downstream