rs254022390 SNP Detail

Summary

• ID
  rs254022390
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:87470874 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGATGTA GGAATTTCCT
  CCAAGGTTTA AGGGAGCAGA TAGTCTGAAG CAAAATAAAT TACTTATGTT TCTAAATGTA
  ATCTTTTCTT TCTTTTTTTA ACTATCCAGT CAAATTTGTT ACACTGTTTC AGTTTTAAAT
  ACTGTTACAA AACTAGTGCA AACATGCGGG GGGGGGGGGG GTCTTGAACC AATTCACAAA
  W
  AATAAAGTTA AAGCCCACTT TAAGTAAAAA GCTCTGGACA AAACTGAGAC TAAAGACTAC
  AAGTTGTATT GTTATTTAAA TTTCTAAAAA CAAACAAACA AACAAAAAGT ATGGTTAATT
  TATGGAACCC ACTTTTGGAA AATCTTCCTC TACCAGTCAG TCACCAGTCA CAAACTTATC
  CCAAAGGTAA ACACATTTCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375448148	MGP_WTSI_8_89268145	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254022390					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375448148	MGP_WTSI_8_89268145	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:87470874 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20765	CpG island 20765	825 bp proximal
Gm10638	predicted gene 10638	1453 bp upstream
Gm63869	predicted gene, 63869	within coordinates
Rr666882	regulatory region 666882	139 bp proximal
Rr666883	regulatory region 666883	1163 bp proximal
Rr666884	regulatory region 666884	1218 bp proximal
Rr666885	regulatory region 666885	1678 bp proximal
Siah1a	siah E3 ubiquitin protein ligase 1A	within coordinates
Tssr78572	transcription start site region 78572	1201 bp upstream
Tssr78573	transcription start site region 78573	1254 bp upstream
Tssr78574	transcription start site region 78574	1290 bp upstream
Tssr78575	transcription start site region 78575	1344 bp upstream
Tssr78576	transcription start site region 78576	1356 bp upstream
Tssr78577	transcription start site region 78577	1409 bp upstream
Tssr78578	transcription start site region 78578	1433 bp upstream
Tssr82293	transcription start site region 82293	1704 bp downstream
Tssr82294	transcription start site region 82294	1847 bp downstream