rs254024683 SNP Detail

Summary

• ID
  rs254024683
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:88202788 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGGACACA GGGGCTGTGA
  CACACCTTTT TCCTTAGTTT CATTTCTGAA ACCCTGAGTG AATGGGGAAG GCTGGCTTCT
  GAGGGAGGGG ACACAGGGGC TGTGACACAC CTTTTTCCTT AGTAGGGTTA CTAGTGTGCT
  GCTCCATCTT GACAGCAACA GGTCTGGTGC CTGGGAAAGA ATAATAGGGT CACATGGTCA
  M
  ACAACAGTGT CTTCTTTCCT AAGCACTCCC CTGAAAGCCC GAAGTGTAAC AGTATATAAC
  AGTGTATACA CTATCTCATA GAGGTGTCTG GTTTTAAATG TAAAATTTTT AAGTTTTAAT
  TATGTGAATA TGTACATATA TGAGTAGATC TCCCTTGAGT GAGAGGTGAC TGTGAGCAGC
  CAGACATCAG TTCAAGGAAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358793382	MGP_WTSI_3_88099403	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254024683					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358793382	MGP_WTSI_3_88099403	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88202788 () rs orientation: forward

Symbol	Name	Function Class
Cct3	chaperonin containing TCP1 subunit 3	1654 bp upstream
Cpgi13369	CpG island 13369	1105 bp proximal
Gm65645	predicted gene, 65645	1153 bp upstream
Rr579705	regulatory region 579705	663 bp proximal
Rr579706	regulatory region 579706	1164 bp proximal
Rr579707	regulatory region 579707	1347 bp proximal
Rr579708	regulatory region 579708	1374 bp proximal
Rr579709	regulatory region 579709	1718 bp proximal
Rr579710	regulatory region 579710	1873 bp proximal
Rr579711	regulatory region 579711	1941 bp proximal
Tsacc	TSSK6 activating co-chaperone	within coordinates
Tssr29933	transcription start site region 29933	1162 bp upstream
Tssr29934	transcription start site region 29934	1500 bp upstream
Tssr29935	transcription start site region 29935	1634 bp upstream
Tssr29936	transcription start site region 29936	1666 bp upstream
Tssr29937	transcription start site region 29937	1715 bp upstream
Tssr33996	transcription start site region 33996	917 bp downstream
Tssr33997	transcription start site region 33997	1109 bp downstream
Tssr33998	transcription start site region 33998	1369 bp downstream
Tssr33999	transcription start site region 33999	1444 bp downstream
Tssr34000	transcription start site region 34000	1498 bp downstream