rs254028522 SNP Detail

Summary

• ID
  rs254028522
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:37856943 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACCAATA ATTCAAATAA
  TTGTTAAATC CAAAAACACA CTAACAATAG ATATTTTCTA CTGATTTAGC TAGTATAGCT
  TCTATAATTT TGGGGGTTTT ATTATTATTT CTTTCTCCAC CCTAATGACT CCCAGAATAA
  GATCTCTTAA GCTCAGATCT ATACCCATGG AACCTTATAA TTTTATACAA TATATACTGT
  R
  TAATCAGTTA CTTAAAAGAA GGTTCAGTAT TCATCAGAAG ATCAAAAGGC TTGATAATAC
  ATGTGTGTAA TGTCAGCATT TGGGAGGTAA GGCAAGGCCA GCCCAGGCTA TATGAGACCC
  TTTCTAAACA AACAAAAGCC CAGAAGGTCA AAAGCAGATT GATGTTCCTT GAAGCATAGG
  TTTTTGAGAC TTTAACTGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325585649	CHEV_18_37883544	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254028522					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:37856943 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9936	CpG island 9936	1148 bp distal
Cpgi9937	CpG island 9937	1851 bp proximal
Gm37165	predicted gene, 37165	within coordinates
Gm37388	predicted gene, 37388	within coordinates
Gm38666	predicted gene, 38666	within coordinates
Gm38667	predicted gene, 38667	within coordinates
Gm53048	predicted gene, 53048	within coordinates
Pcdha4b	protocadherin alpha 4B	within coordinates
Pcdhga1	protocadherin gamma subfamily A, 1	within coordinates
Pcdhga2	protocadherin gamma subfamily A, 2	within coordinates
Pcdhga3	protocadherin gamma subfamily A, 3	within coordinates
Pcdhga4	protocadherin gamma subfamily A, 4	within coordinates
Pcdhga5	protocadherin gamma subfamily A, 5	within coordinates
Pcdhga6	protocadherin gamma subfamily A, 6	within coordinates
Pcdhga7	protocadherin gamma subfamily A, 7	within coordinates
Pcdhga8	protocadherin gamma subfamily A, 8	1816 bp upstream
Pcdhgb1	protocadherin gamma subfamily B, 1	within coordinates
Pcdhgb2	protocadherin gamma subfamily B, 2	within coordinates
Pcdhgb4	protocadherin gamma subfamily B, 4	within coordinates
Rr536311	regulatory region 536311	1680 bp proximal
Tssr150727	transcription start site region 150727	1831 bp upstream