rs254030018 SNP Detail

Summary

• ID
  rs254030018
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:36006099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACAATGTT TTGGTGGGGA
  AATGGGGCTG CTTTTTGCAG TCTTCTGTGG AGTCTGCTTG AGGCTAAGAT GAAGAAATTC
  AGATTGGTTG CATTGAGGAA GATATCTCAA AAAAAAAAAA AAAGTCTAAC CTAGACTCTA
  CCCTGTGGTT TACTACTATG AAGAGTGTTT TGATTGATCA AGCACAGCAA GCTTAGAAAG
  R
  AAAATTACAA AATTATGGTT CAAATAATAA AGGGGCACCA GGAAGTAGAG TGGAGCTAAA
  TCCTGTGTTC AAGGATATTA AATGGAATTA AGGGAGTGAA GGCCTCAGAG CAATATCTTA
  CCCAGTCAAG TTTATTGTTT ATGTGTTTGC AGTTCAACAA GGGCTAGTTA TATCATGTTA
  GGCATTTTTA TTACCTGGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321084824	CHEV_4_35953132	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254030018					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:36006099 () rs orientation: forward

Symbol	Name	Function Class
Gm12369	predicted gene 12369	1953 bp upstream
Lingo2	leucine rich repeat and Ig domain containing 2	within coordinates
Tssr41223	transcription start site region 41223	92 bp upstream