rs254031555 SNP Detail

Summary

• ID
  rs254031555
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:22714662 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGTTCCTA ATCTGCCTTT
  CAAATCCAGG TTTTGAGGTT GGGAGGGGAC CATCTAATTG TATAGCCAAA GCAACTATTT
  GAGTGCAATA GACTTGAGAT GTTTAAGGAA GCTGGCAATG GAAATAAGTC AAGACATACT
  TGCAAATACA TTAGTGTAGG TGGTGATTCT GTAATTCCTG GGACAATTCC CATCCCATAC
  Y
  GCACCAGGCG CTGTGCTTGC AAGGCTCCCA GCGTCAGGGG GAAGGAAGCA CAGTGACTTC
  CATTTTGATC CTGCTGTGGG AAACTGGGGT GGGGGCATCT TTTCACTTCC CGCTTCGAGC
  CTGGGATGAC TGGAACATTG AATTCTGAAG GTTGAGGGCC AGGAGATGCT GGGTTTCCAT
  CCCTGCCGGA CTAAAGTTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395628382	MGP_WTSI_16_22895985	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254031555					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395628382	MGP_WTSI_16_22895985	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:22714662 () rs orientation: forward

Symbol	Name	Function Class
Ahsg	alpha-2-HS-glycoprotein	within coordinates
Gm30505	predicted gene, 30505	1526 bp upstream
Rr513336	regulatory region 513336	1582 bp distal
Rr513337	regulatory region 513337	1116 bp distal
Tssr4819	transcription start site region 4819	571 bp downstream
Tssr4820	transcription start site region 4820	35 bp upstream
Tssr137563	transcription start site region 137563	1671 bp downstream
Tssr137564	transcription start site region 137564	1641 bp downstream
Tssr137565	transcription start site region 137565	1504 bp downstream
Tssr137566	transcription start site region 137566	1495 bp downstream
Tssr137567	transcription start site region 137567	1127 bp downstream
Tssr137568	transcription start site region 137568	1096 bp downstream
Tssr137569	transcription start site region 137569	1075 bp downstream
Tssr137570	transcription start site region 137570	1058 bp downstream
Tssr137571	transcription start site region 137571	720 bp downstream
Tssr137572	transcription start site region 137572	621 bp downstream
Tssr137573	transcription start site region 137573	611 bp downstream
Tssr137574	transcription start site region 137574	592 bp downstream
Tssr137575	transcription start site region 137575	582 bp downstream
Tssr137576	transcription start site region 137576	88 bp upstream
Tssr137577	transcription start site region 137577	510 bp upstream
Tssr137578	transcription start site region 137578	581 bp upstream
Tssr140504	transcription start site region 140504	1520 bp upstream
Tssr140505	transcription start site region 140505	1471 bp upstream
Tssr140506	transcription start site region 140506	1051 bp upstream
Tssr140507	transcription start site region 140507	688 bp upstream
Tssr140508	transcription start site region 140508	646 bp upstream
Tssr140509	transcription start site region 140509	628 bp upstream
Tssr140510	transcription start site region 140510	580 bp upstream
Tssr140511	transcription start site region 140511	566 bp upstream
Tssr140512	transcription start site region 140512	645 bp downstream
Tssr140513	transcription start site region 140513	656 bp downstream
Tssr140514	transcription start site region 140514	689 bp downstream