rs254031839 SNP Detail

Summary

• ID
  rs254031839
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:145811942 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CACCTAAAC TTCCCGCAGC AGCCGGAATT
  GCGGTGACAC TAATCACACA GAGGCAGATG ACGTTTGGGG CCTCGGGTGC TCCCGGGGGA
  GAGCAGGGAG GGGGAAGGGT GGCACAGGGC AGGAGGCACG CAAGGACTGT TGCGGGAAAG
  S
  CACGCAGTCC GGGTCCTGCC CGCCCCAGCC TGCGAGACAC TGTGCTGCCT CCCGTCTCCC
  TCGTGCGATA AGCCACGCCG AGAGTGTGGC GAGCCCACGT TTACTACTGG CACCTCCGCG
  GCCTCCCTCC TTAATCCTGT CTCCAGCGGG                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322074611	CHEV_6_145814736	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254031839					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:145811942 () rs orientation: forward

Symbol	Name	Function Class
Bhlhe41	basic helix-loop-helix family, member e41	796 bp upstream
Cpgi18163	CpG island 18163	within coordinates
Gm43909	predicted gene, 43909	1044 bp downstream
Gm67122	predicted gene, 67122	within coordinates
Gm67128	predicted gene, 67128	1593 bp downstream
Gm67129	predicted gene, 67129	within coordinates
Rr641237	regulatory region 641237	522 bp distal
Rr641238	regulatory region 641238	within coordinates
Tssr59563	transcription start site region 59563	523 bp downstream
Tssr64085	transcription start site region 64085	1494 bp upstream
Tssr64086	transcription start site region 64086	1325 bp upstream
Tssr64087	transcription start site region 64087	857 bp upstream
Tssr64088	transcription start site region 64088	833 bp upstream
Tssr64089	transcription start site region 64089	804 bp upstream
Tssr64090	transcription start site region 64090	781 bp upstream
Tssr64091	transcription start site region 64091	742 bp upstream
Tssr64092	transcription start site region 64092	680 bp upstream
Tssr64093	transcription start site region 64093	659 bp upstream
Tssr64094	transcription start site region 64094	644 bp upstream